OK, Here is the latest... I just spoke to my dealer and they said my truck is done(yes). I asked what it was and they said it was someting to do with the timing. I guess there were some pins sheered off or something like that. Well anyway they said it looks like that was the reason my PCM was fried. It also looks like everything will be covered under warrenty. Now all I have to do is get the remote starter hooked back up.
Well now I can get my truck back in our shop and start taking out the dash so I can get it painted before it is time to put it back on the road in May.
Thanks everyone for your help.
Jared