Rear right of pan just above the pan level? if i remember correctly that would be the main harness for the trans. if thats gone i bet the wiring harness inside the trans has been yanked.
the connector should have appx 10 pins to it, if this is true with your connector, i'd opt for no wiring in the trans.
controls a lot! uhm here i have a link that may help u.
http://tciauto.com/Products/Instruct...part_one_2.htm
scroll down to section 2.1.2 Ford Harness Connector Faces
has a connector diagram for you.